| mrna_data {DrDimont} | R Documentation |
mRNA expression data
Description
mRNA analysis of breast cancer patients data from Krug et al. (2020) (data from the Clinical Proteomic Tumor Analysis Consortium (CPTAC)). The data is stratified by estrogen receptor (ER) expression status ('groupA' = ER+, 'groupB' = ER-). The data was reduced to 50 genes. For each group a data frame is given containing the raw data with the mRNA/gene as rows and the samples as columns. The first column contains the gene identifiers (gene_name).
Usage
mrna_data
Format
- groupA
ER+ data; data.frame: first column contains mRNA/gene identifier gene_name; other columns are samples containing the quantified mRNA data per gene
- groupB
ER- data; data.frame: first column contains mRNA/gene identifier gene_name; other columns are samples containing the quantified mRNA data per gene
Source
Krug, Karsten et al. “Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy.” Cell vol. 183,5 (2020): 1436-1456.e31. doi:10.1016/j.cell.2020.10.036