| DivSampleNum {DivE} | R Documentation |
DivSampleNum
Description
Function to generate an integer sequence representing the lengths of nested samples of sample
Usage
DivSampleNum(ms, n)
Arguments
ms |
the main sample, either as a 2-column data.frame (species ID, count of species), or a vector of species IDs. |
n |
desired number of nested samples (integer) |
Details
This function produces the default list of nested sample lengths for the DivE algorithm. For the vector representation of the main sample (ms) it is equivalent to sort(round(seq(from=length(ms)/n, to=length(ms), by=length(ms)/n)), decreasing=TRUE).
Value
A decreasing sequence of nested sample lengths.
Author(s)
Daniel J. Laydon, Aaron Sim, Charles R.M. Bangham, Becca Asquith
References
Laydon, D. J., Melamed, A., Sim, A., Gillet, N. A., Sim, K., Darko, S., Kroll, S., Douek, D. C., Price, D., Bangham, C. R. M., Asquith, B., Quantification of HTLV-1 clonality and TCR diversity, PLOS Comput. Biol. 2014
Examples
require(DivE)
data(Bact1)
DivSampleNum(Bact1, 3)
DivSampleNum(Bact1, 6)