summary.DLData {DepLogo} | R Documentation |
Summarizing DLData objects
Description
summary
method for class "DLData".
The summary includes the number of sequences, the consensus sequence
and the number of sequences in object
that match the consensus.
Usage
## S3 method for class 'DLData'
summary(object, delete.gaps = FALSE, ...)
Arguments
object |
an object of class "DLData" |
delete.gaps |
if gaps should be removed from the consensus |
... |
further arguments passed to or from other methods |
Value
a list
with elements members
containing the number of sequences,
consensus
containing the consensus sequences, and equal.consensus
containing the
number of sequences in object
that are identical to consensus
Author(s)
Jens Keilwagen, Jan Grau <grau@informatik.uni-halle.de>
Examples
seqs <- read.table(system.file("extdata", "cjun.txt", package = "DepLogo"),
stringsAsFactors = FALSE)
data <- DLData(sequences = seqs[, 1], weights = log1p(seqs[, 2]) )
summary(data)
[Package DepLogo version 1.2.1 Index]