deprects {DepLogo} | R Documentation |
Rectangles of averaged colors
Description
Plots a representation of a set of sequences by rectangles of (scaled) averaged color values of the symbols at each position
Usage
deprects(part, yoff, ic.scale = TRUE)
Arguments
part |
the set of sequences as DLData object |
yoff |
the offset in y-direction within the current plot |
ic.scale |
if |
Details
This function is a low-level plotting function (using rect, internally).
Value
the vertical (y) offset after this plot
Author(s)
Jan Grau <grau@informatik.uni-halle.de>
Examples
# read data and create DLData object
seqs <- read.table(system.file("extdata", "cjun.txt", package = "DepLogo"),
stringsAsFactors = FALSE)
data <- DLData(sequences = seqs[, 1],weights = log1p(seqs[, 2]) )
# create high-level plot
plot(NULL, xlim = c(1, ncol(data$data) - 1), ylim = c(0, nrow(data$data)),
ylab = nrow(data$data), axes = FALSE)
# and add deprects and axis
deprects(data, yoff = nrow(data$data))
axis(1)
[Package DepLogo version 1.2.1 Index]