Functions to Calculate Relatedness on Diploid Genetic Data


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Documentation for package ‘Demerelate’ version 0.9-3

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Demerelate-package Demerelate - Algorithms to estimate pairwise relatedness within populations based on allele sharing
allele.sharing Calculates allele sharing rates or similarity estimators for two populations
Bxy Pairwise genetic similarity calculated based on different relatedness estimators or allele shraing indices
Demerelate Demerelate - Algorithms to estimate pairwise relatedness within populations based on allele sharing
demereldist Example dataset for package Demerelate to calculate inter individual pairwise genetic relatedness.
demerelpop Example dataset for package Demerelate to calculate inter individual pairwise genetic relatedness.
demerelref Example dataset for package Demerelate to calculate inter individual pairwise genetic relatedness.
Emp.calc Function to calculate pairwise relatedness within populations based on allele sharing.
F.stat Head function to calculate F statistics.
Fis Calculates allele and genotype frequencies
Fis.calc Calculation of Fis empirical and bootstrapped values
geo.dist Calculates geographic distances.
glm.prep Preparation for multinomial logistic regression.
input.txt Reads different types of tables and returns an object.
inputformat Example dataset for package Demerelate to calculate inter individual pairwise genetic relatedness.
Li Pairwise genetic similarity calculated based on different relatedness estimators or allele shraing indices
Lin.reg.distance Linear regression of empirical genetic relatedness with geographic distance.
Loci.test Analysis on differences in mean relatedness based on number of loci used for calculations
loiselle Pairwise genetic similarity calculated based on different relatedness estimators or allele shraing indices
lxy Pairwise genetic similarity calculated based on different relatedness estimators or allele shraing indices
lxy.w Pairwise genetic similarity calculated based on different relatedness estimators or allele shraing indices
morans.fin Pairwise genetic similarity calculated based on different relatedness estimators or allele shraing indices
morans.w Pairwise genetic similarity calculated based on different relatedness estimators or allele shraing indices
Mxy Pairwise genetic similarity calculated based on different relatedness estimators or allele shraing indices
offspring Mendelian offspring generator
relate.calc Coordinates internally reference and empirical datasets and statistics
ritland Pairwise genetic similarity calculated based on different relatedness estimators or allele shraing indices
rxy Pairwise genetic similarity calculated based on different relatedness estimators or allele shraing indices
stat.pops Calculation of Fis empirical and bootstrapped values
Sxy Pairwise genetic similarity calculated based on different relatedness estimators or allele shraing indices
wang Pairwise genetic similarity calculated based on different relatedness estimators or allele shraing indices
wang.compose Pairwise genetic similarity calculated based on different relatedness estimators or allele shraing indices
wang.fin Pairwise genetic similarity calculated based on different relatedness estimators or allele shraing indices
wang.fin.w Pairwise genetic similarity calculated based on different relatedness estimators or allele shraing indices
wang.w Pairwise genetic similarity calculated based on different relatedness estimators or allele shraing indices
weir Calculation of F_{is} based on Weir and Cockerham 1984