buildSignatureMatrixUsingSeurat {DWLS}

Signature Matrix Using Seurat

Description

This function builds a signature matrix using genes identified by the DEAnalysis() function.

Usage

buildSignatureMatrixUsingSeurat(
  scdata,
  id,
  path,
  diff.cutoff = 0.5,
  pval.cutoff = 0.01,
  f = 200
)

Arguments

scdata

The data

id

The identities of the genes

path

The path to the file results

diff.cutoff

This is automatically set to 0.5

pval.cutoff

The p-value cutoff. This is automatically set to 0.01

f

The maximum number of genes (when creating the signature matrix, need to reduce number of genes, between 50:f number of significant genes are chosen). If not set, this number is automatically set to 200.

Value

Signature Matrix built using the Seurat algorithm