add.cond.mean.many |
Mean counts and particle time averages for birth-death processes with immigration |
add.cond.mean.one |
Mean counts and particle time averages for birth-death processes with immigration |
add.cond.meanSq.one |
Mean counts and particle time averages for birth-death processes with immigration |
add.generator |
Generating functions for birth-death processes with immigration |
add.joint.mean.many |
Mean counts and particle time averages for birth-death processes with immigration |
add.joint.mean.one |
Mean counts and particle time averages for birth-death processes with immigration |
add.joint.meanSq.one |
Mean counts and particle time averages for birth-death processes with immigration |
add.uncond.mean.one |
ENplus, ENminus, Eholdtime, unconditional on ending state. |
addhold.cond.mean.one |
Mean counts and particle time averages for birth-death processes with immigration |
addhold.generator |
Generating functions for birth-death processes with immigration |
addhold.joint.mean.one |
Mean counts and particle time averages for birth-death processes with immigration |
addrem.cond.mean.one |
Mean counts and particle time averages for birth-death processes with immigration |
addrem.generator |
Generating functions for birth-death processes with immigration |
addrem.joint.mean.one |
Mean counts and particle time averages for birth-death processes with immigration |
addremhold.generator |
Generating functions for birth-death processes with immigration |
all.cond.mean.PO |
Mean counts and particle time averages for birth-death processes with immigration |
all.cond.mean2.PO |
Mean counts and particle time averages for birth-death processes with immigration |
ARsim |
Accept-Reject Simulation |
genDoneSided |
Numerical Differentiation |
getBDinform.full.SC.manual |
Helpers for Getting Information Matrix for MLE estimates on Partially Observed Linear Birth Death (_S_pecial _C_ase with constrained immigration) |
getBDinform.lost.SC.manual |
Helpers for Getting Information Matrix for MLE estimates on Partially Observed Linear Birth Death (_S_pecial _C_ase with constrained immigration) |
getBDinform.PO |
Get Information Matrix for MLE estimates on Partially Observed Linear Birth Death (_S_pecial _C_ase with constrained immigration) |
getBDinform.PO.SC |
Get Information Matrix for MLE estimates on Partially Observed Linear Birth Death (_S_pecial _C_ase with constrained immigration) |
getBDinform.PO.SC.manual |
Helpers for Getting Information Matrix for MLE estimates on Partially Observed Linear Birth Death (_S_pecial _C_ase with constrained immigration) |
getBDjTimes |
Get Jump times of a BD process. |
getBDMCsPOlist |
Methods for Function 'getBDMCsPOlist' in Package 'DOBAD' |
getBDMCsPOlist-method |
Methods for Function 'getBDMCsPOlist' in Package 'DOBAD' |
getBDMCsPOlist-methods |
Methods for Function 'getBDMCsPOlist' in Package 'DOBAD' |
getBDsummaryExpecs |
Functions That Calculate Product Expectations Needed for Inference via EM Algorithm |
getBDsummaryProdExpecs |
Functions That Calculate Product Expectations Needed for Inference via EM Algorithm |
getDataSummary |
Calculate Some Summarizing Information for the Given Data |
getDataSummary.CTMC_PO_many |
Calculate Some Summarizing Information for the Given Data |
getInitParams |
Get multiple starting parameters for EM |
getIthJumpTime |
Get the jump times from a CTMC. |
getIthJumpTimes |
Get the jump times from a CTMC. |
getIthState |
Get the jump times from a CTMC. |
getMCstate |
Get the state of a CTMC at various times |
getNewParams.SC |
Solve for new parameters in restricted model in EM algorithm. |
getPartialData |
Get "partially Observed " Chain from a fully observed one. |
getStates |
Get list of jump states. |
getStates-method |
Get list of jump states. |
getSubMC |
Extract a Sub Markov Chain |
getT |
~~ Methods for Function getT in Package 'DOBAD' ~~ |
getT-method |
~~ Methods for Function getT in Package 'DOBAD' ~~ |
getT-methods |
~~ Methods for Function getT in Package 'DOBAD' ~~ |
getTimes |
Get list of jump times. |
getTimes-method |
Get list of jump times. |
getTs |
~~ Methods for Function getTs in Package 'DOBAD' ~~ |
getTs-method |
~~ Methods for Function getTs in Package 'DOBAD' ~~ |
getTs-methods |
~~ Methods for Function getTs in Package 'DOBAD' ~~ |
graph.CTMC |
Plot CTMCs (possibly Partially Observed) |
graph.CTMC.PO |
Plot CTMCs (possibly Partially Observed) |
rem.cond.mean.many |
Mean counts and particle time averages for birth-death processes with immigration |
rem.cond.mean.one |
Mean counts and particle time averages for birth-death processes with immigration |
rem.cond.meanSq.one |
Mean counts and particle time averages for birth-death processes with immigration |
rem.generator |
Generating functions for birth-death processes with immigration |
rem.joint.mean.many |
Mean counts and particle time averages for birth-death processes with immigration |
rem.joint.mean.one |
Mean counts and particle time averages for birth-death processes with immigration |
rem.joint.meanSq.one |
Mean counts and particle time averages for birth-death processes with immigration |
rem.uncond.mean.one |
ENplus, ENminus, Eholdtime, unconditional on ending state. |
remhold.cond.mean.one |
Mean counts and particle time averages for birth-death processes with immigration |
remhold.generator |
Generating functions for birth-death processes with immigration |
remhold.joint.mean.one |
Mean counts and particle time averages for birth-death processes with immigration |
sampleJumpTime2 |
Functions for Simulating Conditionally the first Jump of a chain. |
sim.condBD |
Simulate birth-death process, Conditionally upon observing its state at finite, discrete time points |
sim.condBD.1 |
Simulate birth-death process, Conditionally upon observing its state at finite, discrete time points |
sim.condBD.main |
Simulate birth-death process, Conditionally upon observing its state at finite, discrete time points |
sim.condBD.main.CTMC_PO_1 |
Simulate birth-death process, Conditionally upon observing its state at finite, discrete time points |
sim.condBD.main.default |
Simulate birth-death process, Conditionally upon observing its state at finite, discrete time points |
sim.condBD.main.list |
Simulate birth-death process, Conditionally upon observing its state at finite, discrete time points |
simplify |
Transform Lists to Vectors |