KmeanOrder {DIscBIO}

Pseudo-time ordering based on k-means clusters

Description

This function takes the exact output of exprmclust function and construct Pseudo-time ordering by mapping all cells onto the path that connects cluster centers.

Usage

KmeanOrder(
  object,
  quiet = FALSE,
  export = FALSE,
  filename = "Cellular_pseudo-time_ordering_based_on_k-meansc-lusters"
)

## S4 method for signature 'DISCBIO'
KmeanOrder(
  object,
  quiet = FALSE,
  export = FALSE,
  filename = "Cellular_pseudo-time_ordering_based_on_k-meansc-lusters"
)

Arguments

object

DISCBIO class object.

quiet

if 'TRUE', suppresses intermediary output

export

if 'TRUE', exports order table to csv

filename

Name of the exported file (if 'export=TRUE')

Value

The DISCBIO-class object input with the kordering slot filled.

Note

This function has been replaced by pseudoTimeOrdering(), but it is being kept for legacy purposes. It will, however, be removed from future versions of DIscBIO.