FinalPreprocessing {DIscBIO}

Final Preprocessing

Description

This function generates the final filtered normalized dataset.

Usage

FinalPreprocessing(
  object,
  GeneFlitering = "NoiseF",
  export = FALSE,
  quiet = FALSE,
  fileName = "filteredDataset"
)

## S4 method for signature 'DISCBIO'
FinalPreprocessing(
  object,
  GeneFlitering = "NoiseF",
  export = FALSE,
  quiet = FALSE,
  fileName = "filteredDataset"
)

Arguments

object

DISCBIO class object.

GeneFlitering

GeneFlitering has to be one of the followings: ["NoiseF","ExpF"]. Default is "NoiseF"

export

A logical vector that allows writing the final gene list in excel file. Default is TRUE.

quiet

if 'TRUE', intermediary output is suppressed

fileName

File name for exporting (if 'export = TRUE')

Value

The DISCBIO-class object input with the FinalGeneList slot filled.

Examples

#sc <- DISCBIO(valuesG1msTest)
#sc <- NoiseFiltering(sc, percentile = 0.9, CV = 0.2, export = FALSE)
#sc <- FinalPreprocessing(sc, GeneFlitering = "NoiseF", export = FALSE)