Package: DGEobj.utils Type: Package Title: Differential Gene Expression (DGE) Analysis Utility Toolkit Version: 1.0.6 Description: Provides a function toolkit to facilitate reproducible RNA-Seq Differential Gene Expression (DGE) analysis (Law (2015) ). The tools include both analysis work-flow and utility functions: mapping/unit conversion, count normalization, accounting for unknown covariates, and more. This is a complement/cohort to the 'DGEobj' package that provides a flexible container to manage and annotate Differential Gene Expression analysis results. Authors@R: c(person("John", "Thompson", role = "aut", email = "jrt@thompsonclan.org"), person("Connie", "Brett", role = c("aut", "cre"), email = "connie@aggregate-genius.com"), person("Isaac", "Neuhaus", role = "aut", email = "isaac.neuhaus@bms.com"), person("Ryan", "Thompson", role = "aut", email = "rct@thompsonclan.org")) Depends: R (>= 3.5.0) License: GPL-3 Language: en-US Encoding: UTF-8 Imports: assertthat, DGEobj (>= 1.0.3), dplyr, methods, stats, stringr Suggests: biomaRt, canvasXpress, conflicted, edgeR, glue, ggplot2, IHW, limma, knitr, qvalue, RNASeqPower, rmarkdown, statmod, sva, testthat, zFPKM biocViews: RoxygenNote: 7.1.2 VignetteBuilder: knitr NeedsCompilation: no Packaged: 2022-05-19 23:29:26 UTC; conniebrett Author: John Thompson [aut], Connie Brett [aut, cre], Isaac Neuhaus [aut], Ryan Thompson [aut] Maintainer: Connie Brett Repository: CRAN Date/Publication: 2022-05-19 23:50:02 UTC