run_pipeline {DFD}

Run the main pipeline for getting drugs from differentail expression profile

Description

The function is used to run the main pipeline by extracting the drug list given differential expressed genes

Usage

run_pipeline(degs_path, output_path = NULL)

Arguments

degs_path

path to csv file containing degs see example file at https://raw.githubusercontent.com/MohmedSoudy/datasharing/master/differential-expression.csv

output_path

absolute path to output directory

Value

significant drug data frame after the re-ranking step

Author(s)

Mohamed Soudy [e-mail]