BarGraphDEGRE {DEGRE} | R Documentation |
Create a bar plot showing the number of downregulated and upregulated genes.
Description
Create a bar plot showing the number of downregulated and upregulated genes.
Usage
BarGraphDEGRE(
results,
log2FC_cutoff = 1,
downregulated_color = "coral2",
upregulated_color = "cornflowerblue",
xlab = "Regulation",
ylab = "Number of genes",
font.x = 10,
font.y = 10,
font.tickslab = 10,
legend_position = "right",
legend.title = "Regulation"
)
Arguments
results |
a data.frame object. It receives the output of the DEGRE function, filtered or not, as input. |
log2FC_cutoff |
it stores the cutoff of the log2FoldChange. The default is 1. |
downregulated_color |
the bar color related to the number of downregulated genes. The default is "coral2". |
upregulated_color |
the bar color related to the number of upregulated genes. The default is "cornflowerblue". |
xlab |
the x lab text. The default is "Regulation". |
ylab |
the y lab text. The default is "Number of genes". |
font.x |
the font size of the x axis. The default is 10. |
font.y |
the font size of the y axis. The default is 10. |
font.tickslab |
the font size of the ticks lab. The default is 10. |
legend_position |
you need to specify here the position of the legend. The default is "right". |
legend.title |
the title of the legend. The default is "Regulation". |
Value
No return value, called for side effects
Examples
# Reading a CSV file for an example:
dir <- system.file("extdata", package = "DEGRE")
results_DEGRE_example <- read.csv(file.path(dir,"results_DEGRE_example.csv"))
# Running the BarGraphDEGRE function
BarGraphDEGRE(results = results_DEGRE_example,
log2FC_cutoff = 1,
downregulated_color = "coral2",
upregulated_color = "cornflowerblue",
xlab = "Regulation",
ylab = "Number of genes",
font.x = 10,
font.y = 10,
font.tickslab = 10,
legend_position = "right",
legend.title = "Regulation")