summarize_kmer,phyDat-method {DCLEAR}

summarize_kmer

Description

Summarize kmer distributions with input sequences

Usage

## S4 method for signature 'phyDat'
summarize_kmer(
  x,
  division = 16L,
  k = 2,
  reps = 20L,
  n_samples = 200L,
  n_nodes = 100L,
  n_targets
)

Arguments

x

input data as a phyDat object

division

number of cell division

k

k-mer (default = 2)

reps

number of simulated trees

n_samples

number of samples to simulate

n_nodes

number of nodes to sample (including both leaves and internval nodes)

n_targets

sequence length. If this argument is missing, the length of the input sequences will be used.

Value

a kmer_summary object

Author(s)

Wuming Gong ([e-mail])