methods of distance-based gene set functional enrichment analysis.


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Documentation for package ‘DBGSA’ version 1.2

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DBGSA-package methods of distance-based gene set functional enrichment analysis
afExp Gene expression profile
avelinkdis Computing the distance by group average method
b1 Gene set function expression profile
centdis Computing the distance by gravity method
DBGSA methods of distance-based gene set functional enrichment analysis
distable function to compute the specific distances between different phenotypes
distance distances between case and control group
functionall P values of distance-based gene set enrichment analysis
rand distances of gene expression obtained by gene resampling
randdis Randomly generating some gene expression profiles by gene resampling
valuep function which computes p values from different phenotypes by distance matrix