write_biogeobears_input {DAISIEprep}

Write input files for BioGeoBEARS

Description

Write input files for a BioGeoBEARS analysis, i.e. a phlyogenetic tree in Newick format and occurrence data in PHYLIP format.

Usage

write_biogeobears_input(phylod, path_to_phylo, path_to_biogeo)

Arguments

phylod

A phylo4d object from the package phylobase containing phylogenetic and endemicity data for each species.

path_to_phylo

string specifying the path and name to write the phylogeny file to.

path_to_biogeo

string specifying the path and name to write the biogeography file to.

Value

Nothing, called for side-effects