select_endemicity_status {DAISIEprep} | R Documentation |
Select endemicity status from ancestral states probabilities
Description
Selects a state for each node (both internal nodes, i.e. ancestral states, and tips, if included) from a table of probabilities.
Usage
select_endemicity_status(asr_df, method = "max")
Arguments
asr_df |
a data frame containing at least these three columns: not_present_prob | endemic_prob | nonendemic_prob (in any order). Each column should contain the estimated probability of the state for each node (rows) and these columns should sum to 1. |
method |
"max" or "random". "max" will select the state with highest probability (selecting last state in event of a tie), while "random" will sample the states randomly with the probabilities as weight for each state. |
Value
a character vector, with the selected endemicity status for each node.
[Package DAISIEprep version 0.4.0 Index]