extract_biogeobears_ancestral_states_probs {DAISIEprep}

Extract ancestral state probabilities from BioGeoBEARS output

Description

Extract the probabilities of each endemicity status for tip and internal node states from the output of an optimisation performed with BioGeoBEARS

Usage

extract_biogeobears_ancestral_states_probs(biogeobears_res)

Arguments

biogeobears_res

a list, the output of BioGeoBEARS::bears_optim_run()

Value

a data.frame with one row per node (tips and internals) and four columns: label | not_present | endemic | nonendemic, the last three columns containing the probability of each endemicity status (and summing to 1).