analyzedata |
Returns a matrix of event counts or raw medians, as specified by inputs. Columns correspond to fcs files and rows to markers in cell types |

asinnorm |
Computes the arcsinh ratio of a matrix in relation to the specified column |

calcperevent |
Calculates percentages of of cell types of interest out of total cell population |

CytobankAPIstatsGUI |
Exports processed events and signaling data |

filterfiles |
Filters a list of fcs files by search terms |

get1status |
Filters matrix based on single sample name condition |

get2status |
Filters matrix columns based on two conditions per file, e.g. patient status, stimluation, time points, etc. |

getfcsfiles |
Gets fcs ID numbers and sample names from a given experiment |

getmarkers |
Gets appropriate marker IDs for channels of interest |

getnewind |
Rearranges signaling results matrix with rows in the desired order as outputs |

getpops |
Gets appropriate gate set IDs for populations of interest |

getrawsignals |
Computes the untransformed medians for cellular markers in populations of interest |

parseevents |
Modifies the list obtained from a call to statistics.events to a matrix with rows corresponding to fcs files and columns corresponding to the population types |

parsestats |
Takes the results of a call to statistics.general and returns a matrix of raw medians with columns corresponding to fcs files and rows to molecules of interest in different cell types |

parsestatsmean |
Takes the results of a call to statistics.general and returns a matrix of raw means with columns corresponding to fcs files and rows to molecules of interest in different cell types |

percentevent |
Calculates the percentage of cell populations given an experiment |