plotMutAnno {CovidMutations}

Plot the mutation statistics after annotating the "nucmer" object by "indelSNP" function

Description

Basic descriptions for the mutational events.

Usage

plotMutAnno(covid_annot = covid_annot, figureType = "MostMut", outdir = NULL)

Arguments

covid_annot

The mutation effects provided by "indelSNP" function.

figureType

Figure type for: "MostMut", "MutPerSample", "VarClasses", "VarType", "NucleoEvents", "ProEvents".

outdir

The output directory.

Value

Plot the selected figure type as output.

Examples

data("covid_annot")
# make sure the covid_annot is a dataframe
covid_annot <- as.data.frame(covid_annot)
#outdir <- tempdir() specify your output directory
plotMutAnno(covid_annot = covid_annot, figureType = "MostMut", outdir = NULL)