nucmer {CovidMutations}

Mutation information derived from "nucmer" SNP analysis

Description

The "nucmer.snps" variant file is obtained by processing the SARS-Cov-2 sequence from Gisaid website (complete, high coverage only, low coverage exclusion, Host=human, Virus name = hCoV-19) with "seqkit" software and "nucmer" scripts. The example data is downsampled from complete data in 2020-07-28 (0.001 proportion, 52 samples).

Usage

data(nucmer)

Format

A dataframe with 437 rows (mutation sites) and 14 columns.

Source

https://www.gisaid.org/

Examples

data(nucmer)