| demo_tax {CoreMicrobiomeR} | R Documentation |
Arabidopsis thaliana - Taxonomy dataset
Description
This dataset was given by Lundberg et al., (2012). The taxonomy table provides information about the taxonomic identity of the OTUs listed in the OTU table. Each row in the taxonomy table corresponds to an OTU from the OTU table, and the columns provide details about the taxonomic classification of that OTU, such as kingdom, phylum, class, order, family, genus, and species. This information allows researchers to identify the microbial species or groups that are present in the root samples. The original dataset contains 777 rows of OTUs and Phylum, Class, Order, Family in columns corresponding to particular OTU.
Usage
demo_tax
Format
An object of class tbl_df (inherits from tbl, data.frame) with 188 rows and 5 columns.
Details
Here only the portion of the dataset is taken for running the functions. The dataset contains 188 rows and 5 columns.