| demo_otu {CoreMicrobiomeR} | R Documentation |
Arabidopsis thaliana - OTU dataset
Description
This dataset was given by Lundberg et al., (2012). The OTU table is a central part of the data set. It represents the abundance or presence/absence of different microbial taxa (operational taxonomic units) in the root samples of Arabidopsis thaliana. Each column in the OTU table corresponds to a specific sample (root) from the study, and each row represents a different OTU, which could be a species or a group of closely related organisms. The table contains numerical values representing the count of each OTU in the corresponding samples. The original dataset contains 18783 rows of OTUs and 1439 samples(columns).
Usage
demo_otu
Format
An object of class tbl_df (inherits from tbl, data.frame) with 188 rows and 1440 columns.
Details
Here only the portion of the dataset is taken for running the functions.
The dataset contains 188 rows and 1440 columns.