Corbi-package {Corbi}R Documentation

Corbi - Collection of Rudimentary Bioinformatics Tools

Description

This pakcage provides a bundle of basic and fundamental bioinformatics tools.

Details

These bioinformatics tools are developed by WuLab at Academy of Mathematics and Systems Science, Chinese Academy of Sciences.

Network querying and alignment:

Subnetwork extraction and search:

Biomarker identification:

Differential expression analysis:

Data normalization:

References

Qiang Huang, Ling-Yun Wu, and Xiang-Sun Zhang. An Efficient Network Querying Method Based on Conditional Random Fields. Bioinformatics, 27(22):3173-3178, 2011.

Qiang Huang, Ling-Yun Wu, and Xiang-Sun Zhang. Corbi: A new R package for biological network alignment and querying. BMC Systems Biology, 7(Suppl 2):S6, 2013.

Duanchen Sun, Xianwen Ren, Eszter Ari, Tamas Korcsmaros, Peter Csermely, and Ling-Yun Wu. Discovering cooperative biomarkers for heterogeneous complex disease diagnoses. Briefings in Bioinformatics, 20(1), 89–101, 2019.

Xinhan Ye, Ling-Yun Wu. URG: a new normalization method for gene expression data based on graph model. Manuscript.


[Package Corbi version 0.6-1 Index]