hir_clust_from_adj_mat {ConsensusClustering} | R Documentation |
Hierarchical clustering from adjacency matrix
Description
Hierarchical clustering from adjacency matrix
Usage
hir_clust_from_adj_mat(
adj.mat,
k = 2,
alpha = 1,
adj.conv = TRUE,
method = "ward.D"
)
Arguments
adj.mat |
adjacency matrix |
k |
number of clusters (default=2) |
alpha |
soft threshold (considered if |
adj.conv |
binary value to apply soft thresholding (default=TRUE) |
method |
distance method (default: |
Details
apply PAM (k-medoids) clustering on the adjacency matrix
Value
vector of clusters
Examples
Adj_mat = rbind(c(0.0,0.9,0.0),
c(0.9,0.0,0.2),
c(0.0,0.2,0.0))
hir_clust_from_adj_mat(Adj_mat)
[Package ConsensusClustering version 1.5.0 Index]