Regression with Compositional Covariates

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Documentation for package ‘Compack’ version 0.1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

cglasso	Fit a linearly constrained linear regression model with group lasso regularization.
classo	Fit a linearly constrained linear regression model with lasso regularization.
coef.compCL	extracts model estimated coefficients from a '"compCL"' object.
coef.cv.compCL	Extract estimated coefficients from a '"cv.compCL"' object.
coef.cv.FuncompCGL	Extract estiamted coefficients from a '"cv.FuncompCGL"' object.
coef.FuncompCGL	Extract estimated coefficients from a '"FuncompCGL"' object.
coef.GIC.compCL	Extracts estimated coefficients from a '"GIC.compCL"' object.
coef.GIC.FuncompCGL	Extract model estimated coefficients from a '"GIC.FuncompCGL"' object.
compCL	Fit regularization path for log-contrast model of compositional data with lasso penalty.
comp_Model	Simulation for log-contrast model.
cv.compCL	Cross-validation for compCL.
cv.FuncompCGL	Cross-validation for FuncompCGL.
Fcomp_Model	Simulation for functional composition data.
FuncompCGL	Fit regularization paths of sparse log-contrast regression with functional compositional predictors.
GIC.compCL	Compute information crieteria for the 'compCL' model.
GIC.FuncompCGL	Compute information crieteria for the 'FuncompCGL' model.
plot.compCL	Plot solution paths from a '"compCL"' object.
plot.cv.compCL	Plot the cross-validation curve produced by '"cv.compCL"' object.
plot.cv.FuncompCGL	Plot the cross-validation curve produced by '"cv.FuncompCGL"'.
plot.FuncompCGL	Plot solution paths from a '"FuncompCGL"' object.
plot.GIC.compCL	Plot the GIC curve produced by '"GIC.compCL"' object.
plot.GIC.FuncompCGL	Plot the GIC curve produced by '"GIC.FuncompCGL"' object.
predict.compCL	Make predictions based on a '"compCL"' object.
predict.cv.compCL	Make predictions based on a '"cv.compCL"' object.
predict.cv.FuncompCGL	Make predictions based on a '"cv.FuncompCGL"' object.
predict.FuncompCGL	Make prediction from a '"FuncompCGL"' object.
predict.GIC.compCL	Make predictions based on a '"GIC.compCL"' object.
predict.GIC.FuncompCGL	Make predictions based on a '"GIC.FuncompCGL"' object.
print.compCL	Print a '"compCL"' object.
print.FuncompCGL	Print a '"FuncompCGL"' object.