plotSequenceRatios {CohortSymmetry}

A plot for the sequence ratios.

Description

It provides a ggplot of the sequence ratios of index and marker cohorts.

Usage

plotSequenceRatios(
  result,
  onlyaSR = FALSE,
  plotTitle = NULL,
  labs = c("SR", "Drug Pairs"),
  colours = c("red", "blue")
)

Arguments

result

Table output from summariseSequenceRatios.

onlyaSR

If the only SR to be plotted is the adjusted SR.

plotTitle

Title of the plot, if NULL no title will be plotted.

labs

Axis labels for the plot.

colours

Colours for both parts of the plot, pre- and post- time 0.

Value

A plot for the sequence ratios of index and marker cohorts.

Examples

library(CohortSymmetry)

cdm <- mockCohortSymmetry()
cdm <- generateSequenceCohortSet(cdm = cdm,
                                 indexTable = "cohort_1",
                                 markerTable = "cohort_2",
                                 name = "joined_cohort")
sequence_ratio <- summariseSequenceRatios(cohort = cdm$joined_cohort,
                                          minCellCount = 0)
plotSequenceRatios(result = sequence_ratio)
CDMConnector::cdmDisconnect(cdm = cdm)