Transform {CodataGS}

Transforms hat values

Description

The function calls the hat.transf function.

Usage

Transform(X, L, var.e, var.u, v, svdVec, svdD, wZt, w)

Arguments

X

Design matrix for the fixed effects

L

Square root matrix of the genomic relationship matrix, G

var.e

Residual variance

var.u

Genetic variance

v

Random effects

svdVec

Vector from the Single Value Decomposition of G

svdD

Diagonal elements of the Single Value Decomposition of G

wZt

Weights times the transpose of the scaled genotype matrix

w

Fitted SNP weights

Value

u

SNP effects

qu

Hat values for the SNP effects

Author(s)

Lars Ronnegard