GLI {CoDiNA}

GLI

Description

This data.table contains node and the weighted topological overlap (wTO) of Transcription Factors (TFs), from GSE4290 (Sun, 2006) for 81 brain samples with glioblastomas. The wTO was calculated using the package wTO.

Usage

data("GLI")

Format

A data frame with 3488761 observations on the following 3 variables.

Node.1

a factor with levels. TF names

Node.2

a factor with levels. TF names

cor

a numeric vector. wTO values calculated using only the TFs

Source

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=gse4290

References

Sun L, Hui AM, Su Q, Vortmeyer A et al. Neuronal and glioma-derived stem cell factor induces angiogenesis within the brain. Cancer Cell 2006 Apr;9(4):287-300. PMID: 16616334

Examples

data(GLI)
str(GLI)