ClusterNodes {CoDiNA}

ClusterNodes

Description

Categorize the Nodes into Phi and Phi tilde.

Usage

ClusterNodes(DiffNet, cutoff.external = 0.8, cutoff.internal = 0.5)

Arguments

DiffNet

The Differential network from MakeDiffNet

cutoff.external

The cut-off between the clusters (delta from the center to the edge coordinates), the closer to 1, the better.

cutoff.internal

The cut-off inside the clusters (delta from the theoretical cluster to the edge coordinates), the closer to zero, the better.

Examples

DiffNet = MakeDiffNet (Data = list(CTR,  AST), Code = c('CTR', 'AST') )
Genes_Phi = ClusterNodes(DiffNet, cutoff.external = 0.5, cutoff.internal = 0.25)
table(Genes_Phi$Phi_tilde)