OnePrimerRemove {CleanBSequences}

Clean biological secuences

Description

Curates biological sequences of primer reverse.This cleaning is required for techniques such as cDNA-AFLP.

Usage

OnePrimerRemove(SEQs, PrimerR)

Arguments

SEQs

dnastring or file with fasta format containing biological sequences that are to be cleaned.

PrimerR

dnastring or file with fasta format containing the reverse primer/vector sequences to be removed.

Value

clean biological sequences and visualization of the alignments

Author(s)

Florencia I Pozzi and Silvina A. Felitti

Examples

SEQs = DNAString(paste("GCCTCGCCTCCCTCTTTGATCAGCTTCGCATATCAGGCAACAGCTCAATTT",
"GGTACTTGTTCAAATAAGCATTTAGACCATCTGTTCCAAGAACCTTTGCAATCTT",
"CACAAGGTGGTCATGGTACGCAGTC", sep=""))
PrimerR= DNAString("GACTGCGTACCATGC")
OnePrimerRemove (SEQs,PrimerR)