DNAStringSetOPR {CleanBSequences}

Curing of biological sequences

Description

Curates biological sequences of primer reverse.This cleaning is required for techniques such as cDNA-AFLP.

Usage

DNAStringSetOPR(SEQs, PrimerR)

Arguments

SEQs

file with fasta format containing biological sequences that are to be cleaned.

PrimerR

dnastring containing the reverse primer/vector sequences to be removed.

Value

clean biological sequences and visualization of the alignments

Author(s)

Florencia I Pozzi, Silvina A. Felitti

Examples

SEQs = readDNAStringSet(system.file("sequences","SeqInputOPR.fasta", package = "CleanBSequences"))
PrimerR= DNAString ("GACTGCGTACCATGC")
DNAStringSetOPR (SEQs,PrimerR)