calcLvls {ChemoSpec2D}  R Documentation 
Calculate Levels for Contour and Image Type Plots
Description
Given a matrix or vector input, this function will assist in selecting levels for preparing
contour and image type plots. For instance, levels can be spaced evenly,
logrithmically, exponentially or using a cumulative distribution function.
NA
values are ignored.
Usage
calcLvls(
M,
n = 10,
mode = "even",
lambda = 1.5,
base = 2,
showHist = FALSE,
...
)
Arguments
M 
A numeric matrix or vector.

n 
An integer giving the number of levels desired:
For mode = "even" n evenly spaced levels are returned.
For mode = "ecdf" , n should be one or more values in the interval [0...1].
For instance, a value of 0.6 corresponds to a single level in which 60 percent
of the matrix values are below, and 40 percent above.
For all other values of mode , n is used internally as floor(n/2)
and the result eventually doubled in order to give a symmetric set of levels. In addition,
only the positive or negative levels may be selected, leaving you with
floor(n/2)/2 levels.

mode 
Character. One of "even" , "log" , "exp" ,
"ecdf" , "posexp" , "negexp" , "poslog" , "neglog"
or NMR . "even" will create evenly
spaced levels. "log" will create levels which are more closely
spaced at the high values, while "exp" does the opposite. The pos or
neg versions select just the positive or negative values. "ecdf"
computes levels at the requested quantiles of the matrix. NMR uses
exp , lambda = 2.0 and n = 32 . It also removes the four
values closest to zero, where the data may be primarily noise.

lambda 
Numeric. A nonzero exponent used with method = "exp"
and relatives. Higher values push the levels toward zero.

base 
Integer. The base used with method = "log" and
relatives.

showHist 
Logical. Shall a histogram be drawn showing the location of
the chosen levels?

... 
Arguments to be passed downstream.

Value
A numeric vector giving the levels.
Author(s)
Bryan A. Hanson, DePauw University. hanson@depauw.edu
Examples
set.seed(9)
MM < matrix(runif(100, 1, 1), nrow = 10) # test data
tsts < c("even", "log", "poslog", "exp", "posexp", "ecdf", "NMR")
for (i in 1:length(tsts)) {
nl < 20
if (tsts[i] == "ecdf") nl < seq(0.1, 0.9, 0.1)
levels < calcLvls(
M = MM, n = nl, mode = tsts[i],
showHist = TRUE, main = tsts[i]
)
}
[Package
ChemoSpec2D version 0.4.187
Index]