R: Plot aovPCAscores Loadings of a Spectra Object

aovPCAloadings {ChemoSpec}

R Documentation

Plot aovPCAscores Loadings of a Spectra Object

Description

Uses the results from aovPCAscores to plot the corresponding loadings.

Usage

aovPCAloadings(spectra, PCA, submat = 1, loads = 1, ref = 1, ...)

Arguments

`spectra`	An object of S3 class `Spectra()`.
`PCA`	List of pca results created by `aov_pcaSpectra`.
`submat`	Integer. Selects list element `submat` from `PCA` which is a list of PCA results, each corresponding to the computation in `aov_pcaSpectra`.
`loads`	An integer vector giving the loadings to plot.
`ref`	An integer specifying the reference spectrum to plot, which appears at the bottom of the plot.
`...`	Parameters to be passed to the plotting routines. Applies to base graphics only.

Value

The returned value depends on the graphics option selected (see GraphicsOptions()).

base: None. Side effect is a plot.
ggplot2: The plot is displayed, and a ggplot2 object is returned if the value is assigned. The plot can be modified in the usual ggplot2 manner.

Author(s)

Bryan A. Hanson (DePauw University), Matthew J. Keinsley.

References

Pinto, Bosc, Nocairi, Barros, and Rutledge. "Using ANOVA-PCA for Discriminant Analysis: ..." Analytica Chimica Acta 629.1-2 (2008): 47-55.

Harrington, Vieira, Espinoza, Nien, Romero, and Yergey. "Analysis of Variance–Principal Component Analysis: ..." Analytica Chimica Acta 544.1-2 (2005): 118-27.