summary.catpredi.survival {CatPredi} | R Documentation |
Summary method for objects of class "catpredi.survival"
Description
Produces a summary of a "catpredi.survival" object. The following are printed: the call to the catpredi.survival() function; the estimated optimal cut points obtained with the method and concordance probability estimator selected and the estimated and bias corrected concordance probability for the categorised variable (whenever the argument correct.index is set to TRUE) .
Usage
## S3 method for class 'catpredi.survival'
summary(object, digits = 4, ...)
Arguments
object |
an object of class "catpredi.survival" as produced by catpredi.survival() |
digits |
. |
... |
further arguments passed to or from other methods. |
Value
Returns an object of class "summary.catpredi.survival" with the same components as the catpredi.survival
function (see catpredi.survival
).
Author(s)
Irantzu Barrio and Maria Xose Rodriguez-Alvarez
References
I Barrio, M.X Rodriguez-Alvarez, L Meira-Machado, C Esteban and I Arostegui (2017). Comparison of two discrimination indexes in the categorisation of continuous predictors in time-to-event studies. SORT, 41:73-92
See Also
See Also as catpredi.survival
.
Examples
library(CatPredi)
library(survival)
set.seed(123)
#Simulate data
n = 500
tauc = 1
X <- rnorm(n=n, mean=0, sd=2)
SurvT <- exp(2*X + rweibull(n = n, shape=1, scale = 1)) + rnorm(n, mean=0, sd=0.25)
# Censoring time
CensTime <- runif(n=n, min=0, max=tauc)
# Status
SurvS <- as.numeric(SurvT <= CensTime)
# Data frame
dat <- data.frame(X = X, SurvT = pmin(SurvT, CensTime), SurvS = SurvS)
# Select optimal cut points using the AddFor algorithm
res <- catpredi.survival (formula= Surv(SurvT,SurvS)~1, cat.var="X", cat.points = 2,
data = dat, method = "addfor", conc.index = "cindex", range = NULL,
correct.index = FALSE)
# Summary
summary(res)