analyze_network,network-method {Cascade}R Documentation

Analysing the network

Description

Calculates some indicators for each node in the network.

Usage

## S4 method for signature 'network'
analyze_network(Omega, nv, label_v = NULL)

Arguments

Omega

a network object

nv

the level of cutoff at which the analysis should be done

label_v

(optionnal) the name of the genes

Value

A matrix containing, for each node, its betweenness,its degree, its output, its closeness.

Author(s)

Nicolas Jung, Frédéric Bertrand , Myriam Maumy-Bertrand.

References

Jung, N., Bertrand, F., Bahram, S., Vallat, L., and Maumy-Bertrand, M. (2014). Cascade: a R-package to study, predict and simulate the diffusion of a signal through a temporal gene network. Bioinformatics, btt705.

Vallat, L., Kemper, C. A., Jung, N., Maumy-Bertrand, M., Bertrand, F., Meyer, N., ... & Bahram, S. (2013). Reverse-engineering the genetic circuitry of a cancer cell with predicted intervention in chronic lymphocytic leukemia. Proceedings of the National Academy of Sciences, 110(2), 459-464.

Examples


	data(network)
	analyze_network(network,nv=0)


[Package Cascade version 2.0 Index]