initialcna {Canopy}

R Documentation

To initialize positions of CNAs

Description

To initialize positions of CNAs on the tree. Used in initialization step of canopy.sample.

Usage

initialcna(tree,cna.name)

Arguments

tree	input tree
cna.name	vector of input CNA names

Value

Matrix specifying positions of CNAs (start and end node).

Author(s)

Yuchao Jiang yuchaoj@wharton.upenn.edu

Examples

data(MDA231_tree)
data(MDA231)
cna.name = rownames(MDA231$WM)
initialcna(MDA231_tree, cna.name)

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