initialP {Canopy}

R Documentation

To initialize clonal frequency matrix

Description

To initialize clonal frequency matris P. Used in initialization step of canopy.sample.

Usage

initialP(tree,sampname,cell.line)

Arguments

tree	input tree
sampname	vector of input sample names
cell.line	default to be FALSE, TRUE if input sample is cell line (no normal cell contamination)

Value

Clonal frequency matrix P.

Author(s)

Yuchao Jiang yuchaoj@wharton.upenn.edu

Examples

data(MDA231_tree)
data(MDA231)
sampname = colnames(MDA231$R)
initialP(MDA231_tree, sampname, cell.line = TRUE)

---