| initialP {Canopy} | R Documentation |
To initialize clonal frequency matrix
Description
To initialize clonal frequency matris P. Used in initialization step of
canopy.sample.
Usage
initialP(tree,sampname,cell.line)
Arguments
tree |
input tree |
sampname |
vector of input sample names |
cell.line |
default to be FALSE, TRUE if input sample is cell line (no normal cell contamination) |
Value
Clonal frequency matrix P.
Author(s)
Yuchao Jiang yuchaoj@wharton.upenn.edu
Examples
data(MDA231_tree)
data(MDA231)
sampname = colnames(MDA231$R)
initialP(MDA231_tree, sampname, cell.line = TRUE)
[Package Canopy version 1.3.0 Index]