getZ {Canopy}

R Documentation

To get SNA genotyping matrix Z

Description

To get SNA genotyping matrix Z from location of SNAs on the tree. Used in canopy.sample.

Usage

getZ(tree, sna.name)

Arguments

tree	input tree
sna.name	vector of SNA names

Value

Genotyping matrix Z.

Author(s)

Yuchao Jiang yuchaoj@wharton.upenn.edu

Examples

data(MDA231_tree)
data(MDA231)
sna.name = rownames(MDA231$R)
getZ(MDA231_tree, sna.name)

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