| getVAF {Canopy} | R Documentation |
To get variant allele frequency (VAF)
Description
To get variant allele frequency (VAF) matrix, which contains percentage of
mutant SNA alleles across samples. Used in canopy.sample.
Usage
getVAF(tree,Y)
Arguments
tree |
input tree |
Y |
SNA CNA overlapping matrix |
Value
Variant allele frequency matrix VAF.
Author(s)
Yuchao Jiang yuchaoj@wharton.upenn.edu
Examples
data(MDA231_tree)
data(MDA231)
Y = MDA231$Y
getVAF(MDA231_tree, Y)
[Package Canopy version 1.3.0 Index]