getVAF {Canopy}

R Documentation

To get variant allele frequency (VAF)

Description

To get variant allele frequency (VAF) matrix, which contains percentage of mutant SNA alleles across samples. Used in canopy.sample.

Usage

getVAF(tree,Y)

Arguments

tree	input tree
Y	SNA CNA overlapping matrix

Value

Variant allele frequency matrix VAF.

Author(s)

Yuchao Jiang yuchaoj@wharton.upenn.edu

Examples

data(MDA231_tree)
data(MDA231)
Y = MDA231$Y
getVAF(MDA231_tree, Y)

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