getQ {Canopy}

R Documentation

To get SNA-CNA genotyping matrix

Description

To get SNA-CNA genotyping matrix Q, which specifies whether an SNA precedes a CNA. Used in canopy.sample.

Usage

getQ(tree, Y, C)

Arguments

tree	input tree
Y	SNA CNA overlapping matrix
C	CNA and CNA region overlapping matrix

Value

Genotyping matrix Q.

Author(s)

Yuchao Jiang yuchaoj@wharton.upenn.edu

Examples

data(MDA231_tree)
data(MDA231)
Y = MDA231$Y
C = MDA231$C
getQ(MDA231_tree, Y, C)

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