canopy.cluster.Estep {Canopy} | R Documentation |
E-step of EM algorithm for multivariate clustering of SNAs. Used in
canopy.cluster
.
canopy.cluster.Estep(Tau, Mu, R, X)
Tau |
prior for proportions of mutation clusters |
Mu |
MAF centroid for each mutation cluster in each sample |
R |
alternative allele read depth matrix |
X |
total read depth matrix |
Matrix of posterior probability of cluster assignment for each mutation.
Yuchao Jiang yuchaoj@wharton.upenn.edu
data(AML43)
R = AML43$R
X = AML43$X
Mu = AML43$Mu
Tau = AML43$Tau
pG = canopy.cluster.Estep(Tau, Mu, R, X)