Package: Canek Type: Package Title: Batch Correction of Single Cell Transcriptome Data Version: 0.2.5 Authors@R: c( person("Martin", "Loza", email = "martin.loza.lopez@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-3342-2643")), person("Diego", "Diez", email = "diego10ruiz@gmail.com", role = c("aut"), comment = c(ORCID = "0000-0002-2325-4893")) ) Description: Non-linear/linear hybrid method for batch-effect correction that uses Mutual Nearest Neighbors (MNNs) to identify similar cells between datasets. Reference: Loza M. et al. (NAR Genomics and Bioinformatics, 2020) . Depends: R (>= 3.5.0) Imports: FNN, irlba, numbers, fpc, bluster, igraph, matrixStats, utils Suggests: testthat (>= 2.1.0), Seurat, SingleCellExperiment, SummarizedExperiment, scater, batchelor, scran, knitr, rmarkdown, patchwork, ggplot2 License: MIT + file LICENSE Encoding: UTF-8 LazyData: true RoxygenNote: 7.2.3 VignetteBuilder: knitr URL: https://martinloza.github.io/Canek/ BugReports: https://github.com/MartinLoza/Canek/issues NeedsCompilation: no Packaged: 2023-12-08 05:07:41 UTC; martin Author: Martin Loza [aut, cre] (), Diego Diez [aut] () Maintainer: Martin Loza Repository: CRAN Date/Publication: 2023-12-08 05:30:02 UTC