CSresult-class {CSFA}R Documentation

An S4 class in which the results of the Connectivity Scores by Factor Analysis are stored.

Description

An S4 class in which the results of the Connectivity Scores by Factor Analysis are stored.

Slots

type

A character string containing the analysis type.

CS

List of any number of lists (depending on how many components were selected) which contain the connectivity loadings and ranking scores for the reference (and query loadings). If permutation was applied, will also contain p-values.

GS

Dataframe containing the gene scores.

extra

List which contains CSRank_Full (contains all intermediate values while calculating the CS Ranking Score), Object (contains the complete original FA or Zhang result) and samplefactorlabels (contains thresholded labels based on the factor loadings, see plot which=8).

permutation.object

Contains CS for permuted data (matrix) and a dataframe with the p-values (only for MFA and Zhang).

call

List object containing the original call of CSanalysis as well as the parameters for the chosen method.


[Package CSFA version 1.2.0 Index]