CSanalysis {CSFA}R Documentation

Connectivity Score Analysis.

Description

Doing a CS analysis, interactively generating graphs. See specific type for additional parameteres.
Types:

Usage

CSanalysis(querMat, refMat, type, ...)

Arguments

querMat

Query matrix (Rows = genes and columns = compounds)

refMat

Reference matrix

type

Type of Factor Analysis or Zhang & Gant ( "CSfabia", "CSmfa", "CSpca", "CSsmfa" or "CSzhang")

...

Additional parameters for analysis

Value

An object of the S4 Class CSresult-class.

Examples


 

data("dataSIM",package="CSFA")
Mat1 <- dataSIM[,c(1:6)]
Mat2 <- dataSIM[,-c(1:6)]

MFA_analysis <- CSanalysis(Mat1,Mat2,"CSmfa")
FABIA_analysis <- CSanalysis(Mat1,Mat2,"CSfabia")
ZHANG_analysis <- CSanalysis(Mat1,Mat2,"CSzhang")


[Package CSFA version 1.2.0 Index]