YeastCellCycle2 {CORM}R Documentation

Yeast Cell Cycle Data Sets of wild type and single mutant

Description

This data set is taken from a yeast cell cycle study in Qin et al. (2014) (See the reference below). It contains the normalized data of 256 cell cycle dependent genes in wild type(WT) and single mutant(SM) yeast, each mesured over time with two technical replicates.

Usage

data(YeastCellCycle2)

Format

A list comprised of four components: normalizedData.WT, normalizedData.SM, designMatrix.WT, and designMatrix.SM.

  1. normalizedData.WT and normalizedData.SM are three-dimensional arrays containing the normalized expression data for 256 genes in WT and SM yeast, respectively. Missing values are indicated by "NA".

  2. designMatrix.WT and designMatrix.SM are three-dimensional arrays used to fit the clustering of linear mixed models (CLMM).

References

Li-Xuan Qin, Linda Breeden and Steven G. Self (2014). Finding gene clusters for a replicated time course study. BMC Res Notes 7:60.


[Package CORM version 1.0.2 Index]