cnvData {CONCUR}R Documentation

Pseudo Copy Number Variants Data

Description

This data set includes simulated CNV data in PLINK CNV data format. The data are also available from the authors through the url provided below. These data were generated following the simulation study used to illustrate the method in the original manuscript also referenced below; it has been reduced to include only 600 individuals. These data are not meaningful and are intended for demonstration purposes only.

Usage

data(cnvData)

Format

cnvData is a data.frame containing 522 observations with 5 columns:

ID

character patient identifier.

CHR

CNV chromosome.

BP1

starting location in base pairs.

BP2

ending location in base pairs.

TYPE

copy number (0,1,3,or 4).

References

Brucker, A., Lu, W., Marceau West, R., Yu, Q-Y., Hsiao, C. K., Hsiao, T-H., Lin, C-H., Magnusson, P. K. E., Holloway, S. T., Sullivan, P. F., Szatkiewicz, J. P., Lu, T-P., and Tzeng, J-Y. Association testing using Copy Number Profile Curves (CONCUR) enhances power in copy number variant analysis. <doi:10.1101/666875>.

https://www4.stat.ncsu.edu/~jytzeng/Software/CONCUR/


[Package CONCUR version 1.3 Index]