| cnvData {CONCUR} | R Documentation |
Pseudo Copy Number Variants Data
Description
This data set includes simulated CNV data in PLINK CNV data format. The data are also available from the authors through the url provided below. These data were generated following the simulation study used to illustrate the method in the original manuscript also referenced below; it has been reduced to include only 600 individuals. These data are not meaningful and are intended for demonstration purposes only.
Usage
data(cnvData)
Format
cnvData is a data.frame containing 522 observations with 5 columns:
- ID
character patient identifier.
- CHR
CNV chromosome.
- BP1
starting location in base pairs.
- BP2
ending location in base pairs.
- TYPE
copy number (0,1,3,or 4).
References
Brucker, A., Lu, W., Marceau West, R., Yu, Q-Y., Hsiao, C. K., Hsiao, T-H., Lin, C-H., Magnusson, P. K. E., Holloway, S. T., Sullivan, P. F., Szatkiewicz, J. P., Lu, T-P., and Tzeng, J-Y. Association testing using Copy Number Profile Curves (CONCUR) enhances power in copy number variant analysis. <doi:10.1101/666875>.
https://www4.stat.ncsu.edu/~jytzeng/Software/CONCUR/