check_and_fix_chains_2stage {COMBO}  R Documentation 
Check Assumption and Fix Label Switching if Assumption is Broken for a List of MCMC Samples
Description
Check Assumption and Fix Label Switching if Assumption is Broken for a List of MCMC Samples
Usage
check_and_fix_chains_2stage(
n_chains,
chains_list,
pistarjj_matrix,
pitildejjj_matrix,
dim_x,
dim_z,
dim_v,
n_cat
)
Arguments
n_chains 
An integer specifying the number of MCMC chains to compute over. 
chains_list 
A numeric list containing the samples from 
pistarjj_matrix 
A numeric matrix of the average
conditional probability 
pitildejjj_matrix 
A numeric matrix of the average conditional probability

dim_x 
The number of columns of the design matrix of the true outcome mechanism, 
dim_z 
The number of columns of the design matrix of the firststage observation mechanism, 
dim_v 
The number of columns of the design matrix of the secondstage observation mechanism, 
n_cat 
The number of categorical values that the true outcome, 
Value
check_and_fix_chains
returns a numeric list of the samples from
n_chains
MCMC chains which have been corrected for label switching if
the following assumption is not met: P(Y^* = j  Y = j, Z) > 0.50 \forall j
.