underscored_pos_to_GRanges {CNVScope} | R Documentation |
Convert coordinates in underscored format to a GRanges object.
Description
This function creates a new GRanges object from a character vector of coordinates in the form "chr1_0_5000" and creates a GRanges object from them.
Usage
underscored_pos_to_GRanges(
underscored_positions = NULL,
extended_data = NULL,
zeroToOneBasedStart = T,
zeroToOneBasedEnd = F
)
Arguments
underscored_positions |
A vector of positions of the form c("chr1_0_5000","chr1_7500_10000","chr1_10000_15000") |
extended_data |
Optional metadata columns. These columns cannot be named "start", "end", "width", or "element". Passed to GRanges object as ... |
zeroToOneBasedStart |
Converts a set of underscored positions that begin with zero to GRanges where the lowest positional value on a chromosome is 1. Essentially adds 1 to start |
zeroToOneBasedEnd |
Adds 1 to the end of the underscored positions |
Value
A GRanges object
Examples
load(system.file("extdata","nbl_result_matrix_sign_small.rda",package = "CNVScope"))
underscored_pos_to_GRanges(colnames(nbl_result_matrix_sign_small))
[Package CNVScope version 3.7.2 Index]