createChromosomalMatrixSet {CNVScope} | R Documentation |
Create chromosomal interaction matrices for CNVScope shiny application.
Description
Takes a linear regression matrix and sets infinites to a finite value, and changes the sign to match the sign of the correlation for each value.
Usage
createChromosomalMatrixSet(
whole_genome_mat,
output_dir = NULL,
prefix = "nbl_"
)
Arguments
whole_genome_mat |
The matrix containing all of the data, from which the individual matrices will be split. |
output_dir |
the folder where the matrices in RData format, will be written. |
prefix |
filename prefix for individual matrices. Default: "nbl_" |
Value
The list of files already written to disk, with full filenames and paths.
Examples
#examples for this function would be too large to
#include and should be run on an HPC machine node.
#illustration of this process is shown clearly in
#the vignette and can be done if a user properly
#follows the instructions.
# The function is intended to be run on a whole interactome matrix (chr1-X).
[Package CNVScope version 3.7.2 Index]