createChromosomalMatrixSet {CNVScope} | R Documentation |
Takes a linear regression matrix and sets infinites to a finite value, and changes the sign to match the sign of the correlation for each value.
createChromosomalMatrixSet( whole_genome_mat, output_dir = NULL, prefix = "nbl_" )
whole_genome_mat |
The matrix containing all of the data, from which the individual matrices will be split. |
output_dir |
the folder where the matrices in RData format, will be written. |
prefix |
filename prefix for individual matrices. Default: "nbl_" |
The list of files already written to disk, with full filenames and paths.
#examples for this function would be too large to #include and should be run on an HPC machine node. #illustration of this process is shown clearly in #the vignette and can be done if a user properly #follows the instructions. # The function is intended to be run on a whole interactome matrix (chr1-X).