calcCNVKernelProbDist {CNVScope} | R Documentation |
This function produces several matrices, including a Z-score matrix from a matrix of the same size and a percentile matrix of these Z-scores
submatrix |
A matrix of CNV data in an intrachromosomal region (e.g. chr1 vs chr1 or chr5 vs chr5) |
win |
a window size for the matrix that calculates the windowed average using the kernel function |
debug |
extra output for debugging. |
parallel |
use parallelization using mcmapply and doParallel? |
mcmcores |
The number of cores used for parallelization. |
load(system.file("extdata","nbl_result_matrix_sign_small.rda",package = "CNVScope")) mat_prob_dist<-calcCNVKernelProbDist(nbl_result_matrix_sign_small,parallel=FALSE) mat_prob_dist